Index

A

add_org_atlas_prefix() (in module whitematteranalysis.anatomy.org_atlas_utils) add_point_data_array() (in module whitematteranalysis.filter) add_polydata() (whitematteranalysis.congeal_multisubject.MultiSubjectRegistration method) anisotropic_smooth() (in module whitematteranalysis.filter) apply_transform() (whitematteranalysis.register.RegistrationInformation method)

argsort_by_jet_lookup_table() (in module whitematteranalysis.render) array_to_vtk() (in module whitematteranalysis.filter) ASO (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange attribute) ASS (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleType attribute) AtlasAvailability (class in whitematteranalysis.anatomy.org_atlas_utils)

B

bin module bin.wm_append_clusters module bin.wm_append_clusters_to_anatomical_tracts module bin.wm_append_diffusion_measures_across_subjects module bin.wm_assess_cluster_location_by_hemisphere module bin.wm_average_tract_measures module bin.wm_change_nrrd_dir module bin.wm_cluster_atlas module bin.wm_cluster_from_atlas module bin.wm_cluster_remove_outliers module bin.wm_cluster_volumetric_measurements module bin.wm_compare_vtks module bin.wm_create_mrml_file module bin.wm_diffusion_measurements module bin.wm_download_anatomically_curated_atlas module

bin.wm_harden_transform module bin.wm_preprocess_all module bin.wm_quality_control_after_clustering module bin.wm_quality_control_cluster_measurements module bin.wm_quality_control_tract_overlap module bin.wm_quality_control_tractography module bin.wm_register_multisubject_faster module bin.wm_register_to_atlas_new module bin.wm_remove_data_along_tracts module bin.wm_separate_clusters_by_hemisphere module bin.wm_tract_to_volume module bin.wm_vtp2vtk module build_download_url() (in module bin.wm_download_anatomically_curated_atlas) build_suffix() (in module bin.wm_download_anatomically_curated_atlas) (in module whitematteranalysis.fileio.utils) build_vtk_renderer() (whitematteranalysis.render.RenderPolyData method) BundleName (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) BundlePopulationMathOperation (class in utilities.wm_compute_bundle_feature_population_math)

C

calculate_hemispheres() (whitematteranalysis.fibers.FiberArray method) cast_feature_data() (in module utilities.wm_compute_bundle_feature_population_math) CER (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange attribute) (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleType attribute) check() (whitematteranalysis.tract_measurement.Demographics method) (whitematteranalysis.tract_measurement.TractMeasurement method) clean_up_feature_data() (in module utilities.wm_compute_bundle_feature_population_math) ClusterAtlas (class in whitematteranalysis.cluster) ClusterIdxMean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) COM (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange attribute) (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleType attribute) compute() (whitematteranalysis.laterality.WhiteMatterLaterality method) (whitematteranalysis.register_two_subjects.RegisterTractography method) (whitematteranalysis.register_two_subjects_nonrigid.RegisterTractographyNonrigidThinPlateSplines method) (whitematteranalysis.register_two_subjects_nonrigid_bsplines.RegisterTractographyNonrigid method) (whitematteranalysis.relative_distance.RelativeDistanceModel method) compute_bundle_population_feature_diff() (in module utilities.wm_compute_bundle_feature_population_math)

compute_bundle_population_feature_diff_relative() (in module utilities.wm_compute_bundle_feature_population_math) compute_bundle_population_feature_stats() (in module utilities.wm_compute_bundle_feature_population_math) compute_bundle_population_feature_sum() (in module utilities.wm_compute_bundle_feature_population_math) compute_laterality_index() (in module whitematteranalysis.laterality) compute_lengths() (in module whitematteranalysis.filter) compute_thin_plate_spline_transform() (in module whitematteranalysis.register_two_subjects_nonrigid) congeal_multisubject_inner_loop() (in module whitematteranalysis.congeal_multisubject) constraint() (whitematteranalysis.register_two_subjects.RegisterTractography method) (whitematteranalysis.register_two_subjects_nonrigid.RegisterTractographyNonrigidThinPlateSplines method) (whitematteranalysis.register_two_subjects_nonrigid_bsplines.RegisterTractographyNonrigid method) convert_from_polydata() (whitematteranalysis.fibers.FiberArray method) convert_numpy_array_to_vtk_points() (in module whitematteranalysis.register_two_subjects_nonrigid) (in module whitematteranalysis.register_two_subjects_nonrigid_bsplines) convert_to_polydata() (whitematteranalysis.fibers.FiberArray method) convert_transform_to_vtk() (in module whitematteranalysis.register_two_subjects) (in module whitematteranalysis.register_two_subjects_nonrigid) (in module whitematteranalysis.register_two_subjects_nonrigid_bsplines) (whitematteranalysis.register.RegistrationInformation method)

D

DataExchangeFormatFileExtension (class in bin.wm_download_anatomically_curated_atlas) DEFAULT (whitematteranalysis.anatomy.org_atlas_utils.AtlasAvailability attribute) Demographics (class in whitematteranalysis.tract_measurement)

DIFFERENCE (utilities.wm_compute_bundle_feature_population_math.BundlePopulationMathOperation attribute) distance_to_similarity() (in module whitematteranalysis.similarity) downsample() (in module whitematteranalysis.filter)

E

EstimatedUncertaintyMean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute)

F

FA1Mean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) FA2Mean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) Fiber (class in whitematteranalysis.fibers) fiber_distance() (in module whitematteranalysis.similarity) fiber_distance_numpy() (in module whitematteranalysis.register_two_subjects) fiber_distance_oriented() (in module whitematteranalysis.similarity) FiberArray (class in whitematteranalysis.fibers)

find_filenames() (in module whitematteranalysis.fileio.utils) fix_hemisphere_location_property_name() (in module utilities.wm_fix_hemisphere_loc_name_in_tractogram) fix_trace() (in module utilities.wm_fix_UKF_trace) flatten_length_distribution() (in module whitematteranalysis.filter) frechDist() (in module whitematteranalysis.similarity) Frechet_distances_2() (in module whitematteranalysis.similarity) FWMean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute)

G

get_association_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_bundle_feature() (in module whitematteranalysis.anatomy.org_atlas_utils) get_bundle_long_name() (in module whitematteranalysis.anatomy.org_atlas_utils) get_bundle_short_name() (in module whitematteranalysis.anatomy.org_atlas_utils) get_bundle_type() (in module whitematteranalysis.anatomy.org_atlas_utils) get_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_cerebellar_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_commissural_augmented_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_commissural_bundle_names() (in module bin.wm_append_clusters_to_anatomical_tracts) get_commissural_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_demographics_by_header() (whitematteranalysis.tract_measurement.Demographics method) get_demographics_by_index() (whitematteranalysis.tract_measurement.Demographics method) get_equivalent_fiber() (whitematteranalysis.fibers.Fiber method) (whitematteranalysis.fibers.FiberArray method) get_fiber() (whitematteranalysis.fibers.FiberArray method) get_fibers() (whitematteranalysis.fibers.FiberArray method) get_hemispheric_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_hemispheric_mono_bundle_names() (in module bin.wm_append_clusters_to_anatomical_tracts)

get_hemispheric_mono_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_hot_lookup_table() (in module whitematteranalysis.render) get_jet_lookup_table() (in module whitematteranalysis.render) get_local_atlas_bundle_fname() (in module whitematteranalysis.data.atlas.utils) get_measurements_by_index() (whitematteranalysis.tract_measurement.TractMeasurement method) get_measurements_by_name() (whitematteranalysis.tract_measurement.TractMeasurement method) get_name() (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap static method) get_oriented_fibers() (whitematteranalysis.fibers.FiberArray method) get_projection_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_range_high() (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange static method) get_range_low() (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange static method) get_record() (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion static method) get_reflected_fiber() (whitematteranalysis.fibers.Fiber method) get_striatal_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_superficial_bundles() (in module whitematteranalysis.anatomy.org_atlas_utils) get_type() (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap static method) get_type_map() (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap static method) get_version() (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion static method)

H

Hemisphere (class in whitematteranalysis.anatomy.org_atlas_utils) HemisphereLocationMean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute)

hierarchical() (in module whitematteranalysis.cluster) histeq() (in module whitematteranalysis.render)

I

ID (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleFileHeading attribute) initialize() (whitematteranalysis.register.RegistrationInformation method) initialize_fiber_sample() (whitematteranalysis.register.RegistrationInformation method) initialize_nonrigid_grid() (whitematteranalysis.register_two_subjects_nonrigid.RegisterTractographyNonrigidThinPlateSplines method) (whitematteranalysis.register_two_subjects_nonrigid_bsplines.RegisterTractographyNonrigid method)

inner_loop_objective() (in module whitematteranalysis.register_two_subjects) is_tripwire() (in module whitematteranalysis.utils.tripwire) iterate() (whitematteranalysis.congeal_multisubject.MultiSubjectRegistration method) (whitematteranalysis.congeal_to_atlas.SubjectToAtlasRegistration method)

J

JSON (bin.wm_download_anatomically_curated_atlas.DataExchangeFormatFileExtension attribute)

L

laplacian_of_gaussian() (in module whitematteranalysis.filter) LateralityResults (class in whitematteranalysis.io) LEFT (whitematteranalysis.anatomy.org_atlas_utils.Hemisphere attribute) list_files() (in module utilities.wm_fix_UKF_trace) list_nhdr_files() (in module utilities.wm_compute_FA_from_DWIs) list_transform_files() (in module whitematteranalysis.io) list_vtk_files() (in module whitematteranalysis.io)

load() (whitematteranalysis.cluster.ClusterAtlas method) (whitematteranalysis.tract_measurement.Demographics method) (whitematteranalysis.tract_measurement.TractMeasurement method) load_atlas() (in module whitematteranalysis.cluster) load_demographics() (in module whitematteranalysis.tract_measurement) load_measurement() (in module whitematteranalysis.tract_measurement) load_measurement_in_folder() (in module whitematteranalysis.tract_measurement) LONG_NAME (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleFileHeading attribute)

M

main() (in module bin.wm_append_clusters) (in module bin.wm_append_clusters_to_anatomical_tracts) (in module bin.wm_append_diffusion_measures_across_subjects) (in module bin.wm_assess_cluster_location_by_hemisphere) (in module bin.wm_average_tract_measures) (in module bin.wm_change_nrrd_dir) (in module bin.wm_cluster_atlas) (in module bin.wm_cluster_from_atlas) (in module bin.wm_cluster_remove_outliers) (in module bin.wm_cluster_volumetric_measurements) (in module bin.wm_compare_vtks) (in module bin.wm_create_mrml_file) (in module bin.wm_diffusion_measurements) (in module bin.wm_download_anatomically_curated_atlas) (in module bin.wm_harden_transform) (in module bin.wm_preprocess_all) (in module bin.wm_quality_control_after_clustering) (in module bin.wm_quality_control_cluster_measurements) (in module bin.wm_quality_control_tract_overlap) (in module bin.wm_quality_control_tractography) (in module bin.wm_register_multisubject_faster) (in module bin.wm_register_to_atlas_new) (in module bin.wm_remove_data_along_tracts) (in module bin.wm_separate_clusters_by_hemisphere) (in module bin.wm_tract_to_volume) (in module bin.wm_vtp2vtk) (in module utilities.wm_assess_cluster_location) (in module utilities.wm_compute_bundle_feature_population_math) (in module utilities.wm_compute_FA_from_DWIs) (in module utilities.wm_compute_TAP) (in module utilities.wm_extract_cluster) (in module utilities.wm_extract_clusters_by_endpoints) (in module utilities.wm_fix_hemisphere_loc_name_in_tractogram) (in module utilities.wm_fix_UKF_trace) (in module utilities.wm_flatten_length_distribution) (in module utilities.wm_laterality_all) (in module utilities.wm_measure_all_clusters) (in module utilities.wm_measure_endpoint_overlap) (in module utilities.wm_query_atlas_bundles_names) (in module utilities.wm_statistics) (in module utilities.wm_statistics_export_data) (in module utilities.wm_transform_polydata) mask() (in module whitematteranalysis.filter) mask_all_clusters() (in module whitematteranalysis.cluster) match_order() (whitematteranalysis.fibers.Fiber method) MeanLength (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) measure_line_lengths() (in module whitematteranalysis.filter) module bin bin.wm_append_clusters bin.wm_append_clusters_to_anatomical_tracts bin.wm_append_diffusion_measures_across_subjects bin.wm_assess_cluster_location_by_hemisphere bin.wm_average_tract_measures bin.wm_change_nrrd_dir bin.wm_cluster_atlas bin.wm_cluster_from_atlas bin.wm_cluster_remove_outliers bin.wm_cluster_volumetric_measurements bin.wm_compare_vtks bin.wm_create_mrml_file bin.wm_diffusion_measurements bin.wm_download_anatomically_curated_atlas bin.wm_harden_transform bin.wm_preprocess_all bin.wm_quality_control_after_clustering bin.wm_quality_control_cluster_measurements bin.wm_quality_control_tract_overlap bin.wm_quality_control_tractography bin.wm_register_multisubject_faster bin.wm_register_to_atlas_new bin.wm_remove_data_along_tracts bin.wm_separate_clusters_by_hemisphere bin.wm_tract_to_volume bin.wm_vtp2vtk utilities utilities.wm_assess_cluster_location utilities.wm_compute_bundle_feature_population_math utilities.wm_compute_FA_from_DWIs utilities.wm_compute_TAP utilities.wm_extract_cluster utilities.wm_extract_clusters_by_endpoints utilities.wm_fix_hemisphere_loc_name_in_tractogram utilities.wm_fix_UKF_trace utilities.wm_flatten_length_distribution utilities.wm_laterality_all utilities.wm_measure_all_clusters utilities.wm_measure_endpoint_overlap utilities.wm_query_atlas_bundles_names utilities.wm_statistics utilities.wm_statistics_export_data utilities.wm_transform_polydata whitematteranalysis whitematteranalysis.anatomy whitematteranalysis.anatomy.org_atlas_utils whitematteranalysis.cluster whitematteranalysis.congeal_multisubject whitematteranalysis.congeal_to_atlas whitematteranalysis.data whitematteranalysis.data.atlas whitematteranalysis.data.atlas.utils whitematteranalysis.fibers whitematteranalysis.fileio whitematteranalysis.fileio.utils whitematteranalysis.filter whitematteranalysis.io whitematteranalysis.laterality whitematteranalysis.mrml whitematteranalysis.register whitematteranalysis.register_two_subjects whitematteranalysis.register_two_subjects_nonrigid whitematteranalysis.register_two_subjects_nonrigid_bsplines whitematteranalysis.relative_distance whitematteranalysis.render whitematteranalysis.similarity whitematteranalysis.tract_measurement whitematteranalysis.utils whitematteranalysis.utils.opt_pckg whitematteranalysis.utils.tripwire whitematteranalysis.utils.utils

MRML (whitematteranalysis.fileio.utils.SlicerFileExtension attribute) MultiSubjectRegistration (class in whitematteranalysis.congeal_multisubject)

N

nearPSD() (in module whitematteranalysis.cluster)

O

objective_function() (whitematteranalysis.register_two_subjects.RegisterTractography method) (whitematteranalysis.register_two_subjects_nonrigid.RegisterTractographyNonrigidThinPlateSplines method) (whitematteranalysis.register_two_subjects_nonrigid_bsplines.RegisterTractographyNonrigid method) optional_package() (in module whitematteranalysis.utils.opt_pckg) ORGAtlasBundleFileHeading (class in whitematteranalysis.anatomy.org_atlas_utils)

ORGAtlasBundleRange (class in whitematteranalysis.anatomy.org_atlas_utils) ORGAtlasBundleType (class in whitematteranalysis.anatomy.org_atlas_utils) ORGAtlasVersion (class in bin.wm_download_anatomically_curated_atlas) (class in whitematteranalysis.data.atlas.utils) output_and_quality_control_cluster_atlas() (in module whitematteranalysis.cluster)

P

pairwise_frechet_distances() (in module whitematteranalysis.similarity) pd_to_array() (in module whitematteranalysis.filter) perform_bundle_population_operation() (in module utilities.wm_compute_bundle_feature_population_math) PointCount (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute)

preprocess() (in module whitematteranalysis.filter) PRO (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange attribute) (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleType attribute) process_feature_data() (in module utilities.wm_compute_bundle_feature_population_math)

Q

query_bundle_names() (in module whitematteranalysis.anatomy.org_atlas_utils)

query_bundle_names_from_anatomical_tracts() (in module whitematteranalysis.anatomy.org_atlas_utils) query_bundle_names_from_scene_files() (in module whitematteranalysis.anatomy.org_atlas_utils)

R

read() (whitematteranalysis.io.LateralityResults method) read_and_preprocess_polydata_directory() (in module whitematteranalysis.io) read_polydata() (in module whitematteranalysis.io) rectangular_frechet_distances() (in module whitematteranalysis.similarity) RegisterTractography (class in whitematteranalysis.register_two_subjects) RegisterTractographyNonrigid (class in whitematteranalysis.register_two_subjects_nonrigid_bsplines) RegisterTractographyNonrigidThinPlateSplines (class in whitematteranalysis.register_two_subjects_nonrigid) RegistrationInformation (class in whitematteranalysis.register)

RelativeDistanceModel (class in whitematteranalysis.relative_distance) remove_hemisphere() (in module whitematteranalysis.filter) remove_mean_from_transforms() (whitematteranalysis.congeal_multisubject.MultiSubjectRegistration method) remove_outliers() (in module whitematteranalysis.filter) render() (in module whitematteranalysis.render) render_polydata() (whitematteranalysis.render.RenderPolyData method) RenderPolyData (class in whitematteranalysis.render) RIGHT (whitematteranalysis.anatomy.org_atlas_utils.Hemisphere attribute)

S

save() (whitematteranalysis.cluster.ClusterAtlas method) save2txt() (in module whitematteranalysis.fileio.utils) save_image() (whitematteranalysis.render.RenderPolyData method) save_transformed_polydata() (whitematteranalysis.congeal_to_atlas.SubjectToAtlasRegistration method) save_transformed_polydata_to_disk() (whitematteranalysis.congeal_to_atlas.SubjectToAtlasRegistration method) save_transformed_polydatas() (whitematteranalysis.congeal_multisubject.MultiSubjectRegistration method) save_views() (in module whitematteranalysis.render) (whitematteranalysis.render.RenderPolyData method) scalar_bar_off() (whitematteranalysis.render.RenderPolyData method) scalar_bar_on() (whitematteranalysis.render.RenderPolyData method) SEPARATED (whitematteranalysis.anatomy.org_atlas_utils.AtlasAvailability attribute) set_atlas() (whitematteranalysis.congeal_to_atlas.SubjectToAtlasRegistration method) set_subject() (whitematteranalysis.congeal_to_atlas.SubjectToAtlasRegistration method) set_transform() (whitematteranalysis.register.RegistrationInformation method)

SHORT_NAME (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleFileHeading attribute) SlicerFileExtension (class in whitematteranalysis.fileio.utils) smooth() (in module whitematteranalysis.filter) spectral() (in module whitematteranalysis.cluster) spectral_atlas_label() (in module whitematteranalysis.cluster) STATS (utilities.wm_compute_bundle_feature_population_math.BundlePopulationMathOperation attribute) STR (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange attribute) (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleType attribute) StreamlineCount (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) SubjectToAtlasRegistration (class in whitematteranalysis.congeal_to_atlas) SUM (utilities.wm_compute_bundle_feature_population_math.BundlePopulationMathOperation attribute) SUP (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange attribute) (whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleType attribute) symmetrize() (in module whitematteranalysis.filter)

T

total_probability_numpy() (in module whitematteranalysis.register_two_subjects) total_similarity() (in module whitematteranalysis.similarity) total_similarity_and_distances() (in module whitematteranalysis.similarity) total_similarity_for_laterality() (in module whitematteranalysis.similarity) Trace1Mean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) Trace2Mean (utilities.wm_compute_bundle_feature_population_math.WMABundleFeatureDataMap attribute) TractMeasurement (class in whitematteranalysis.tract_measurement) transform_fiber_array() (whitematteranalysis.register.RegistrationInformation method) transform_fiber_array_NOT_USED() (whitematteranalysis.register.RegistrationInformation method) transform_fiber_array_numpy() (in module whitematteranalysis.register_two_subjects) (whitematteranalysis.register_two_subjects_nonrigid.RegisterTractographyNonrigidThinPlateSplines method) (whitematteranalysis.register_two_subjects_nonrigid_bsplines.RegisterTractographyNonrigid method)

transform_fiber_array_numpyNOTUSED() (in module whitematteranalysis.register_two_subjects) transform_polydata_from_disk() (in module whitematteranalysis.io) transform_polydata_from_disk_using_transform_object() (in module whitematteranalysis.io) transform_polydatas_from_disk() (in module whitematteranalysis.io) transform_polydatas_from_diskOLD() (in module whitematteranalysis.io) transform_polydatas_from_diskUNSAFE() (in module whitematteranalysis.io) TripWire (class in whitematteranalysis.utils.tripwire) TripWireError

U

update_nonrigid_grid() (whitematteranalysis.congeal_multisubject.MultiSubjectRegistration method) (whitematteranalysis.congeal_to_atlas.SubjectToAtlasRegistration method) utilities module utilities.wm_assess_cluster_location module utilities.wm_compute_bundle_feature_population_math module utilities.wm_compute_FA_from_DWIs module utilities.wm_compute_TAP module utilities.wm_extract_cluster module utilities.wm_extract_clusters_by_endpoints module utilities.wm_fix_hemisphere_loc_name_in_tractogram module

utilities.wm_fix_UKF_trace module utilities.wm_flatten_length_distribution module utilities.wm_laterality_all module utilities.wm_measure_all_clusters module utilities.wm_measure_endpoint_overlap module utilities.wm_query_atlas_bundles_names module utilities.wm_statistics module utilities.wm_statistics_export_data module utilities.wm_transform_polydata module

V

V1_1 (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion attribute) (whitematteranalysis.data.atlas.utils.ORGAtlasVersion attribute) V1_1_1 (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion attribute) (whitematteranalysis.data.atlas.utils.ORGAtlasVersion attribute) V1_2 (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion attribute) (whitematteranalysis.data.atlas.utils.ORGAtlasVersion attribute) V1_3_A (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion attribute) (whitematteranalysis.data.atlas.utils.ORGAtlasVersion attribute) V1_3_B (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion attribute) (whitematteranalysis.data.atlas.utils.ORGAtlasVersion attribute)

V1_4 (bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion attribute) (whitematteranalysis.data.atlas.utils.ORGAtlasVersion attribute) view_anterior() (whitematteranalysis.render.RenderPolyData method) view_cluster_number() (in module whitematteranalysis.cluster) view_inferior() (whitematteranalysis.render.RenderPolyData method) view_left() (whitematteranalysis.render.RenderPolyData method) view_posterior() (whitematteranalysis.render.RenderPolyData method) view_right() (whitematteranalysis.render.RenderPolyData method) view_superior() (whitematteranalysis.render.RenderPolyData method) VTKFileExtension (class in whitematteranalysis.fileio.utils) VTP (whitematteranalysis.fileio.utils.VTKFileExtension attribute)

W

whitematteranalysis module whitematteranalysis.anatomy module whitematteranalysis.anatomy.org_atlas_utils module whitematteranalysis.cluster module whitematteranalysis.congeal_multisubject module whitematteranalysis.congeal_to_atlas module whitematteranalysis.data module whitematteranalysis.data.atlas module whitematteranalysis.data.atlas.utils module whitematteranalysis.fibers module whitematteranalysis.fileio module whitematteranalysis.fileio.utils module whitematteranalysis.filter module whitematteranalysis.io module whitematteranalysis.laterality module whitematteranalysis.mrml module whitematteranalysis.register module

whitematteranalysis.register_two_subjects module whitematteranalysis.register_two_subjects_nonrigid module whitematteranalysis.register_two_subjects_nonrigid_bsplines module whitematteranalysis.relative_distance module whitematteranalysis.render module whitematteranalysis.similarity module whitematteranalysis.tract_measurement module whitematteranalysis.utils module whitematteranalysis.utils.opt_pckg module whitematteranalysis.utils.tripwire module whitematteranalysis.utils.utils module WhiteMatterLaterality (class in whitematteranalysis.laterality) WMABundleFeatureDataMap (class in utilities.wm_compute_bundle_feature_population_math) write() (in module whitematteranalysis.mrml) (whitematteranalysis.io.LateralityResults method) (whitematteranalysis.mrml.WriteMRML method) write_node() (whitematteranalysis.mrml.WriteMRML method) write_polydata() (in module whitematteranalysis.io) write_prop_node() (whitematteranalysis.mrml.WriteMRML method) write_transforms_to_itk_format() (in module whitematteranalysis.io) WriteMRML (class in whitematteranalysis.mrml)