whitematteranalysis.anatomy package#

Subpackages#

Submodules#

whitematteranalysis.anatomy.org_atlas_utils module#

class whitematteranalysis.anatomy.org_atlas_utils.AtlasAvailability(value)#

Bases: Enum

An enumeration.

DEFAULT = 'default'#
SEPARATED = 'separated'#
class whitematteranalysis.anatomy.org_atlas_utils.Hemisphere(value)#

Bases: Enum

An enumeration.

LEFT = 'left'#
RIGHT = 'right'#
class whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleFileHeading(value)#

Bases: Enum

An enumeration.

ID = 'id'#
LONG_NAME = 'long_name'#
SHORT_NAME = 'short_name'#
class whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleRange(value)#

Bases: Enum

An enumeration.

ASO = (101, 199)#
CER = (201, 299)#
COM = (301, 399)#
PRO = (401, 499)#
STR = (501, 599)#
SUP = (601, 699)#
static get_range_high(name)#
static get_range_low(name)#
class whitematteranalysis.anatomy.org_atlas_utils.ORGAtlasBundleType(value)#

Bases: Enum

An enumeration.

ASS = 'Association'#
CER = 'Cerebellar'#
COM = 'Commissural'#
PRO = 'Projection'#
STR = 'Striatal'#
SUP = 'Superficial'#
whitematteranalysis.anatomy.org_atlas_utils.add_org_atlas_prefix(bundles)#
whitematteranalysis.anatomy.org_atlas_utils.get_association_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_bundle_feature(df, bundle_id, column)#
whitematteranalysis.anatomy.org_atlas_utils.get_bundle_long_name(df, bundle_id)#
whitematteranalysis.anatomy.org_atlas_utils.get_bundle_short_name(df, bundle_id)#
whitematteranalysis.anatomy.org_atlas_utils.get_bundle_type(df, bundle_type)#
whitematteranalysis.anatomy.org_atlas_utils.get_bundles(df, bundle_id)#
whitematteranalysis.anatomy.org_atlas_utils.get_cerebellar_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_commissural_augmented_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_commissural_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_hemispheric_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_hemispheric_mono_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_projection_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_striatal_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.get_superficial_bundles(df)#
whitematteranalysis.anatomy.org_atlas_utils.query_bundle_names(path, atlas_availability)#
whitematteranalysis.anatomy.org_atlas_utils.query_bundle_names_from_anatomical_tracts(path)#
whitematteranalysis.anatomy.org_atlas_utils.query_bundle_names_from_scene_files(path)#

Module contents#