bin package#

Subpackages#

Submodules#

bin.harden_transform_with_slicer module#

bin.wm_append_clusters module#

bin.wm_append_clusters.main()#

bin.wm_append_clusters_to_anatomical_tracts module#

bin.wm_append_clusters_to_anatomical_tracts.get_commissural_bundle_names(_df)#
bin.wm_append_clusters_to_anatomical_tracts.get_hemispheric_mono_bundle_names(_df)#
bin.wm_append_clusters_to_anatomical_tracts.main()#

bin.wm_append_diffusion_measures_across_subjects module#

bin.wm_append_diffusion_measures_across_subjects.main()#

bin.wm_assess_cluster_location_by_hemisphere module#

bin.wm_assess_cluster_location_by_hemisphere.main()#

bin.wm_average_tract_measures module#

bin.wm_average_tract_measures.main()#

bin.wm_change_nrrd_dir module#

bin.wm_change_nrrd_dir.main()#

bin.wm_cluster_atlas module#

bin.wm_cluster_atlas.main()#

bin.wm_cluster_from_atlas module#

bin.wm_cluster_from_atlas.main()#

bin.wm_cluster_remove_outliers module#

bin.wm_cluster_remove_outliers.main()#

bin.wm_cluster_volumetric_measurements module#

bin.wm_cluster_volumetric_measurements.main()#

bin.wm_compare_vtks module#

bin.wm_compare_vtks.main()#

bin.wm_create_mrml_file module#

bin.wm_create_mrml_file.main()#

bin.wm_diffusion_measurements module#

bin.wm_diffusion_measurements.main()#

bin.wm_download_anatomically_curated_atlas module#

class bin.wm_download_anatomically_curated_atlas.DataExchangeFormatFileExtension(value)#

Bases: Enum

An enumeration.

JSON = 'json'#
class bin.wm_download_anatomically_curated_atlas.ORGAtlasVersion(value)#

Bases: Enum

An enumeration.

V1_1 = ('v1.1', '2648284')#
V1_1_1 = ('v1.1.1', '2648292')#
V1_2 = ('v1.2', '4156927')#
V1_3_A = ('v1.3a', '5109770')#
V1_3_B = ('v1.3b', '7784967')#
V1_4 = ('v1.4', '8082481')#
static get_record(name)#
static get_version(name)#
bin.wm_download_anatomically_curated_atlas.build_download_url(root_url, version)#
bin.wm_download_anatomically_curated_atlas.build_suffix(extension)#
bin.wm_download_anatomically_curated_atlas.main()#

bin.wm_harden_transform module#

bin.wm_harden_transform.main()#

bin.wm_preprocess_all module#

bin.wm_preprocess_all.main()#

bin.wm_quality_control_after_clustering module#

bin.wm_quality_control_after_clustering.main()#

bin.wm_quality_control_cluster_measurements module#

bin.wm_quality_control_cluster_measurements.main()#

bin.wm_quality_control_tract_overlap module#

bin.wm_quality_control_tract_overlap.main()#

bin.wm_quality_control_tractography module#

bin.wm_quality_control_tractography.main()#

bin.wm_register_multisubject_faster module#

bin.wm_register_multisubject_faster.main()#

bin.wm_register_to_atlas_new module#

bin.wm_register_to_atlas_new.main()#

bin.wm_remove_data_along_tracts module#

bin.wm_remove_data_along_tracts.main()#

bin.wm_separate_clusters_by_hemisphere module#

bin.wm_separate_clusters_by_hemisphere.main()#

bin.wm_tract_to_volume module#

bin.wm_tract_to_volume.main()#

bin.wm_vtp2vtk module#

bin.wm_vtp2vtk.main()#

Module contents#